../../tmp/servers/virsirnadb/167698300
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1199 | 1 | tagtcacggctagctgtga | 19 | |
| D85516.1 | Hepatitis C virus genomic RNA, complete cds | 9457 | ................... | 9475 | 100 |
| AF011751.1 | Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds | 9521 | ................... | 9539 | 100 |
| AF011752.1 | Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds | 9521 | ................... | 9539 | 100 |
| AF011753.1 | Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds | 9521 | ................... | 9539 | 100 |
| D89815.1 | Hepatitis C virus genomic RNA, complete sequence | 9470 | ................... | 9488 | 100 |
| AF054247.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete | 9517 | ................... | 9535 | 100 |
| AF054248.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete | 9517 | ................... | 9535 | 100 |
| AF054249.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete | 9518 | ................... | 9536 | 100 |
| AJ132997.1 | Hepatitis C virus, complete genome, isolate HCV-AD78P1 | 9455 | ................... | 9473 | 100 |
| AJ238799.1 | Hepatitis C virus type 1b complete genome, isolate Con1 | 9527 | ................... | 9545 | 100 |
| AF176573.1 | Hepatitis C virus subtype 1b strain 274933RU, complete genome | 9522 | ................... | 9540 | 100 |
| AB016785.1 | Hepatitis C virus genomic RNA, complete sequence | 9460 | ................... | 9478 | 100 |
| AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 9582 | ................... | 9600 | 100 |
| AF169003.1 | Hepatitis C virus subtype 2a isolate G2aK1, complete genome | 9615 | ................... | 9633 | 100 |
| AF169004.1 | Hepatitis C virus subtype 2a isolate G2aK3, complete genome | 9575 | ................... | 9593 | 100 |
| AF271632.1 | Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome | 9540 | ................... | 9558 | 100 |
| AB030907.1 | Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome | 9576 | ................... | 9594 | 100 |
| AJ278830.1 | Hepatitis C virus genomic RNA for polyprotein gene | 9532 | ................... | 9550 | 100 |
| AB049088.1 | Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 | 9538 | ................... | 9556 | 100 |
| AB049089.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT10 | 9493 | ................... | 9511 | 100 |
| AB049090.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9493 | ................... | 9511 | 100 |
| AB049091.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9469 | ................... | 9487 | 100 |
| AB049095.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16 | 9507 | ................... | 9525 | 100 |
| AB049101.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT22 | 9520 | ................... | 9538 | 100 |
| AF333324.1 | Hepatitis C virus type 1b polyprotein mRNA, complete cds | 9509 | ................... | 9527 | 100 |
| AB047639.1 | Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome | 9600 | ................... | 9618 | 100 |
| AB047641.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 | 9581 | ................... | 9599 | 100 |
| AB047642.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 | 9600 | ................... | 9618 | 100 |
| AB047643.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 | 9563 | ................... | 9581 | 100 |
| AB047644.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 | 9613 | ................... | 9631 | 100 |
| AB047645.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 | 9605 | ................... | 9623 | 100 |
| AF356827.1 | Hepatitis C virus subtype 1b isolate HCV-S1, complete genome | 9531 | ................... | 9549 | 100 |
| AY045702.1 | Hepatitis C virus isolate HCR6, complete genome | 9533 | ................... | 9551 | 100 |
| AF139594.2 | Hepatitis C virus subtype 1b strain HCV-N, complete genome | 9538 | ................... | 9556 | 100 |
| AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 9509 | ................... | 9527 | 100 |
| AY460204.1 | Hepatitis C virus from Shanghai, complete genome | 9499 | ................... | 9517 | 100 |
| AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 9611 | ................... | 9629 | 100 |
| D84263.2 | Hepatitis C virus (isolate VN235) genomic RNA, complete genome | 9537 | ................... | 9555 | 100 |
| D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 9523 | ................... | 9541 | 100 |
| D84265.2 | Hepatitis C virus (isolate VN004) genomic RNA, complete genome | 9544 | ................... | 9562 | 100 |
| AB191333.1 | Hepatitis C virus genomic RNA, complete genome, strain:0 | 9509 | ................... | 9527 | 100 |
| DQ071885.1 | Hepatitis C virus subtype 1b polyprotein mRNA, complete cds | 9527 | ................... | 9545 | 100 |
| AB249644.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9481 | ................... | 9499 | 100 |
| EF621489.1 | Hepatitis C virus subtype 1a strain HC-TN, complete genome | 9521 | ................... | 9539 | 100 |
| EU260395.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete | 9314 | ................... | 9332 | 100 |
| EU260395.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete | 8385 | ..c.g...a........._ | 8402 | 78 |
| EU363761.1 | Recombinant Hepatitis C virus H77C/JFH1, complete genome | 9588 | ................... | 9606 | 100 |
| AB426117.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9481 | ................... | 9499 | 100 |
| AB435162.2 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9543 | ................... | 9561 | 100 |
| EU255967.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet | 9286 | ................... | 9304 | 100 |
| EU857431.1 | Hepatitis C virus subtype 1b isolate Whu, complete genome | 9525 | ................... | 9543 | 100 |
| AB442219.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9509 | ................... | 9527 | 100 |
| AB442220.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9509 | ................... | 9527 | 100 |
| AB442221.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9509 | ................... | 9527 | 100 |
| AB442222.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9512 | ................... | 9530 | 100 |
| FN435993.1 | Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN | 9535 | ................... | 9553 | 100 |
| AB520610.1 | Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC | 9520 | ................... | 9538 | 100 |
| GU133617.1 | Hepatitis C virus subtype 1b, complete genome | 9568 | ................... | 9586 | 100 |
| FN666428.2 | Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol | 9515 | ................... | 9533 | 100 |
| D84262.2 | Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC | 9550 | ................... | 9568 | 100 |
| AF177036.1 | Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen | 9633 | ................... | 9651 | 100 |
| AF009606.1 | Hepatitis C virus subtype 1a polyprotein gene, complete cds | 9568 | ................... | 9586 | 100 |
| AF169005.1 | Hepatitis C virus subtype 2a isolate NDM59, complete genome | 9622 | ............c...... | 9640 | 94 |
| AB047640.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 | 9596 | .g................. | 9614 | 94 |
| EU155294.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V329/2002, complet | 9275 | ...............a... | 9293 | 94 |
| EU155247.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1/2005, complete | 9305 | ....g.............. | 9323 | 94 |
| AM910652.2 | Hepatitis C virus subtype 1g complete genome | 9476 | ...............____ | 9490 | 78 |
| AJ851228.1 | Hepatitis C virus gene for polyprotein, genomic RNA, isolate Equatori | 9468 | .............._____ | 9481 | 73 |
| AF511948.1 | Hepatitis C virus isolate XF222 polyprotein-like gene, complete seque | 8453 | ..c.g...a........._ | 8470 | 78 |
| EF407426.1 | Hepatitis C virus isolate 8070 polyprotein genomic sequence | 8401 | ..c.g...a........._ | 8418 | 78 |
| EF407434.1 | Hepatitis C virus isolate 2011 polyprotein gene, complete cds | 8374 | ..c.g...a........._ | 8391 | 78 |
| EF407442.1 | Hepatitis C virus isolate 8012 polyprotein gene, complete cds | 8366 | ..c.g...a........._ | 8383 | 78 |
| EF407449.1 | Hepatitis C virus isolate 2027 polyprotein gene, complete cds | 8412 | ..c.g...a........._ | 8429 | 78 |
| EU362881.1 | Hepatitis C virus isolate 2027_FU24 polyprotein (pol) gene, partial c | 8413 | ..c.g...a........._ | 8430 | 78 |
| EU362898.1 | Hepatitis C virus isolate 8012_FU24 polyprotein (pol) gene, complete | 8356 | ..c.g...a........._ | 8373 | 78 |
| EU362899.1 | Hepatitis C virus isolate 1013q polyprotein (pol) gene, partial cds | 8413 | ..c.g...a........._ | 8430 | 78 |
| EU362901.1 | Hepatitis C virus isolate 2011q polyprotein (pol) gene, complete cds | 8374 | ..c.g...a........._ | 8391 | 78 |
| EU362902.1 | Hepatitis C virus isolate 2027q polyprotein (pol) gene, partial cds | 8412 | ..c.g...a........._ | 8429 | 78 |
| EU239715.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V423/2003, complet | 8378 | ..c.g...a........._ | 8395 | 78 |
| EU260396.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V11/2004, complete | 8355 | ..c.g...a........._ | 8372 | 78 |
| EU155242.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V73/2004, complete | 8369 | ..c.g...a........._ | 8386 | 78 |
| EU155246.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V93/2003, complete | 8371 | ..c.g...a........._ | 8388 | 78 |
| EU482838.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V361/2006, complet | 8387 | ..c.g...a........._ | 8404 | 78 |
| EU482843.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V435/2005, complet | 8379 | ..c.g...a........._ | 8396 | 78 |
| EU482847.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V5/2004, complete | 8369 | ..c.g...a........._ | 8386 | 78 |
| EU482867.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V461/2006, complet | 8385 | ..c.g...a........._ | 8402 | 78 |
| EU482878.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V19/2004, complete | 8378 | ..c.g...a........._ | 8395 | 78 |
| EU155249.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V337/2006, complet | 8369 | ..c.g...a........._ | 8386 | 78 |
| EU155270.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V399/2006, complet | 8369 | ..c.g...a........._ | 8386 | 78 |
| EU155276.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V432/2002, complet | 8371 | ..c.g...a........._ | 8388 | 78 |
| EU155286.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V319/2001, complet | 8347 | ..c.g...a........._ | 8364 | 78 |
| EU155297.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V333/2002, complet | 8368 | ..c.g...a........._ | 8385 | 78 |
| EU155309.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V356/2003, complet | 8367 | ..c.g...a........._ | 8384 | 78 |
| EU155313.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V413/2003, complet | 8360 | ..c.g...a........._ | 8377 | 78 |
| EU155338.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V169/1996, complet | 8370 | ..c.g...a........._ | 8387 | 78 |
| EU155339.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V172/1990, complet | 8347 | ..c.g...a........._ | 8364 | 78 |
| EU155352.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V262/2004, complet | 8378 | ..c.g...a........._ | 8395 | 78 |
| EU529676.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V39/2004, complete | 8384 | ..c.g...a........._ | 8401 | 78 |
| EU595697.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V507/2001, complet | 8368 | ..c.g...a........._ | 8385 | 78 |
| EU595698.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V44/2001, complete | 8369 | ..c.g...a........._ | 8386 | 78 |
| EU255928.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V231/2003, complet | 8378 | ..c.g...a........._ | 8395 | 78 |
| EU255937.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V700/2006, complet | 8369 | ..c.g...a........._ | 8386 | 78 |
| EU256067.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V402/2006, complet | 8379 | ..c.g...a........._ | 8396 | 78 |
| EU256068.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V405/2006, complet | 8372 | ..c.g...a........._ | 8389 | 78 |
| EU256087.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V114/2001, complet | 8347 | ..c.g...a........._ | 8364 | 78 |
| EU256097.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V324/2001, complet | 8378 | ..c.a...a........._ | 8395 | 78 |
| EU255998.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V113/2001, complet | 8379 | ..c.g...a........._ | 8396 | 78 |
| EU256013.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V53/2004, complete | 8376 | ..c.g...a........._ | 8393 | 78 |
| EU256023.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V67/2003, complete | 8378 | ..c.g...a........._ | 8395 | 78 |
| EU256025.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V79/2002, complete | 8348 | ..c.g...a........._ | 8365 | 78 |
| EU256032.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V92/2003, complete | 8376 | ..c.g...a........._ | 8393 | 78 |
| EU256037.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V98/2004, complete | 8385 | ..c.g...a........._ | 8402 | 78 |
| EU256041.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2/2005, complete | 8383 | ..c.g...a........._ | 8400 | 78 |
| EU256047.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V393/2006, complet | 8378 | ..c.g...a........._ | 8395 | 78 |
| EU256052.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V403/2006, complet | 8377 | ..c.g...a........._ | 8394 | 78 |
| EU255981.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V191/1990, complet | 8385 | ..c.g...a........._ | 8402 | 78 |
| EU255992.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V213/1992, complet | 8373 | ..c.g...a........._ | 8390 | 78 |
| FJ024087.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1705/2007, comple | 8379 | ..c.g...a........._ | 8396 | 78 |
| FJ024274.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1707/2007, comple | 8305 | ..c.g...a........._ | 8322 | 78 |
| FJ024280.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1717/2007, comple | 8361 | ..c.g...a........._ | 8378 | 78 |
| EU862827.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V218/1993, partial | 8369 | ..c.g...a........._ | 8386 | 78 |
| FJ182000.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1712/2007, comple | 8346 | ..c.g...a........._ | 8363 | 78 |
| EU781804.1 | Hepatitis C virus subtype 1a isolate 02-46, complete genome | 8376 | ..c.g...a........._ | 8393 | 78 |
| FJ821465.1 | Hepatitis C virus strain M21-2k/1b, complete genome | 8435 | ..c.g...a........._ | 8452 | 78 |